How To Install r-bioc-fmcsr on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-fmcsr on Debian 12.
What is r-bioc-fmcsr
r-bioc-fmcsr is:
The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering.
There are three methods to install r-bioc-fmcsr on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-fmcsr Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-fmcsr using apt-get by running the following command:
sudo apt-get -y install r-bioc-fmcsr
Install r-bioc-fmcsr Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-fmcsr using apt by running the following command:
sudo apt -y install r-bioc-fmcsr
Install r-bioc-fmcsr Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-fmcsr using aptitude by running the following command:
sudo aptitude -y install r-bioc-fmcsr
How To Uninstall r-bioc-fmcsr on Debian 12
To uninstall only the r-bioc-fmcsr package we can use the following command:
sudo apt-get remove r-bioc-fmcsr
Uninstall r-bioc-fmcsr And Its Dependencies
To uninstall r-bioc-fmcsr and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-fmcsr
Remove r-bioc-fmcsr Configurations and Data
To remove r-bioc-fmcsr configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-fmcsr
Remove r-bioc-fmcsr configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-fmcsr configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-fmcsr
Dependencies
r-bioc-fmcsr have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-chemminer
- r-cran-runit
- r-bioc-biocgenerics
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-fmcsr package on Debian 12 using different package management tools: apt, apt-get and aptitude.
