How To Install r-bioc-chemminer on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-chemminer
on Debian 12.
What is r-bioc-chemminer
r-bioc-chemminer is:
ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R. Its latest version contains functions for efficient processing of large numbers of molecules, physicochemical/structural property predictions, structural similarity searching, classification and clustering of compound libraries with a wide spectrum of algorithms. In addition, it offers visualization functions for compound clustering results and chemical structures.
There are three methods to install r-bioc-chemminer
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-chemminer Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-chemminer
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-chemminer
Install r-bioc-chemminer Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-chemminer
using apt
by running the following command:
sudo apt -y install r-bioc-chemminer
Install r-bioc-chemminer Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-chemminer
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-chemminer
How To Uninstall r-bioc-chemminer on Debian 12
To uninstall only the r-bioc-chemminer
package we can use the following command:
sudo apt-get remove r-bioc-chemminer
Uninstall r-bioc-chemminer And Its Dependencies
To uninstall r-bioc-chemminer
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-chemminer
Remove r-bioc-chemminer Configurations and Data
To remove r-bioc-chemminer
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-chemminer
Remove r-bioc-chemminer configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-chemminer
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-chemminer
Dependencies
r-bioc-chemminer have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-rjson
- r-cran-rcurl
- r-cran-dbi
- r-cran-digest
- r-bioc-biocgenerics
- r-cran-rcpp
- r-cran-ggplot2
- r-cran-gridextra
- r-cran-png
- r-cran-base64enc
- r-cran-dt
- r-cran-rsvg
- r-cran-jsonlite
- r-cran-stringi
- r-cran-bh
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-chemminer
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.