How To Install python3-pauvre on Debian 12
Introduction
In this tutorial we learn how to install python3-pauvre on Debian 12.
What is python3-pauvre
python3-pauvre is:
Pauvre is a plotting package designed for nanopore and PacBio long reads.
This package currently hosts four scripts for plotting and/or printing stats.
pauvre marginplot Takes a fastq file as input and outputs a marginal histogram with a heatmap. pauvre stats Takes a fastq file as input and prints out a table of stats, including how many basepairs/reads there are for a length/mean quality cutoff. This is also automagically called when using pauvre marginplot pauvre redwood Method of representing circular genomes. A redwood plot contains long reads as “rings” on the inside, a gene annotation “cambrium/phloem”, and a RNAseq “bark”. The input is .bam files for the long reads and RNAseq data, and a .gff file for the annotation. pauvre synteny Makes a synteny plot of circular genomes. Finds the most parsimonius rotation to display the synteny of all the input genomes with the fewest crossings-over. Input is one .gff file per circular genome and one directory of gene alignments.
There are three methods to install python3-pauvre on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-pauvre Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-pauvre using apt-get by running the following command:
sudo apt-get -y install python3-pauvre
Install python3-pauvre Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-pauvre using apt by running the following command:
sudo apt -y install python3-pauvre
Install python3-pauvre Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-pauvre using aptitude by running the following command:
sudo aptitude -y install python3-pauvre
How To Uninstall python3-pauvre on Debian 12
To uninstall only the python3-pauvre package we can use the following command:
sudo apt-get remove python3-pauvre
Uninstall python3-pauvre And Its Dependencies
To uninstall python3-pauvre and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove python3-pauvre
Remove python3-pauvre Configurations and Data
To remove python3-pauvre configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge python3-pauvre
Remove python3-pauvre configuration, data, and all of its dependencies
We can use the following command to remove python3-pauvre configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-pauvre
Dependencies
python3-pauvre have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-pauvre package on Debian 12 using different package management tools: apt, apt-get and aptitude.
