How To Install vt on Debian 12
Introduction
In this tutorial we learn how to install vt on Debian 12.
What is vt
vt is:
vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
Vt-normalize is a tool to normalize representation of genetic variants in the VCF. Variant normalization is formally defined as the consistent representation of genetic variants in an unambiguous and concise way. In vt a simple general algorithm to enforce this is implemented.
There are three methods to install vt on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install vt Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install vt using apt-get by running the following command:
sudo apt-get -y install vt
Install vt Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install vt using apt by running the following command:
sudo apt -y install vt
Install vt Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install vt using aptitude by running the following command:
sudo aptitude -y install vt
How To Uninstall vt on Debian 12
To uninstall only the vt package we can use the following command:
sudo apt-get remove vt
Uninstall vt And Its Dependencies
To uninstall vt and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove vt
Remove vt Configurations and Data
To remove vt configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge vt
Remove vt configuration, data, and all of its dependencies
We can use the following command to remove vt configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge vt
Dependencies
vt have the following dependencies:
References
Summary
In this tutorial we learn how to install vt package on Debian 12 using different package management tools: apt, apt-get and aptitude.
