How To Install seqprep-data on Debian 12
Introduction
In this tutorial we learn how to install seqprep-data on Debian 12.
What is seqprep-data
seqprep-data is:
SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap.
This package is not needed for normal operation of seqprep. It simply serves some test data as well as a test script.
There are three methods to install seqprep-data on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install seqprep-data Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install seqprep-data using apt-get by running the following command:
sudo apt-get -y install seqprep-data
Install seqprep-data Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install seqprep-data using apt by running the following command:
sudo apt -y install seqprep-data
Install seqprep-data Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install seqprep-data using aptitude by running the following command:
sudo aptitude -y install seqprep-data
How To Uninstall seqprep-data on Debian 12
To uninstall only the seqprep-data package we can use the following command:
sudo apt-get remove seqprep-data
Uninstall seqprep-data And Its Dependencies
To uninstall seqprep-data and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove seqprep-data
Remove seqprep-data Configurations and Data
To remove seqprep-data configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge seqprep-data
Remove seqprep-data configuration, data, and all of its dependencies
We can use the following command to remove seqprep-data configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge seqprep-data
Dependencies
seqprep-data have the following dependencies:
References
Summary
In this tutorial we learn how to install seqprep-data package on Debian 12 using different package management tools: apt, apt-get and aptitude.
