How To Install r-other-chbutils on Debian 12
Introduction
In this tutorial we learn how to install r-other-chbutils on Debian 12.
What is r-other-chbutils
r-other-chbutils is:
This GNU R package contains the following functions: chb_utils-package chb_utils annotate_df Annotate Dataframe containing Ensembl IDs with Gene Symbols and Descriptions boxplotoutliers Cel file IDs of intensity boxplot outlier arrays (in characters). chb_utils chb_utils col2rownames add a column to a dataframe consisting of the current rownames convertIDs Get other Ids for genes in the same order create_report Create report of QC getTFpairs Get mouse TF-target pairs from opossum database get_biomart Get biomart annotation from id ggheatmap generate a heatmap + dendrograms, ggplot2 style ggheatmap.show Display a ggheatmap ggplotDispEsts Plot Dispersion Estimates - nicer ggplot version of DESeq graph mds Plot MDS mdsplot.RGset MDS (MultiDimensional Scaling) Plots nuseoutliers Cel file IDs of intensity NUSE outlier arrays (in characters). PCAplot.cds Pairwise Principal Component Analysis Plots of CountDataSet objects PCAplot.eset Pairwise Principal Component Analysis Plots Plots the differntially expressed genes on an MA plotDE plot, ggplot style If adjusted pvalues are present, colors those that pass cutoff red plot_dendro ggplot based dendrogram plot print_enrichGO Clean and print results from enrichGO Plots the pvalue quantiles against the uniform qqplot_JH distribution. If adjusted pvalues are present, colors those that pass cutoff red rleoutliers Cel file IDs of intensity RLE outlier arrays (in characters). row2colnames add a column to a dataframe consisting of the current rownames runGO Run GO using clusterprofiler variance_by_component Plot PC importance volcano_density_plot Create volcano plot from log2FC and adjusted pvalues data frame write_report Write report of QC
There are three methods to install r-other-chbutils on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-other-chbutils Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-other-chbutils using apt-get by running the following command:
sudo apt-get -y install r-other-chbutils
Install r-other-chbutils Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-other-chbutils using apt by running the following command:
sudo apt -y install r-other-chbutils
Install r-other-chbutils Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-other-chbutils using aptitude by running the following command:
sudo aptitude -y install r-other-chbutils
How To Uninstall r-other-chbutils on Debian 12
To uninstall only the r-other-chbutils package we can use the following command:
sudo apt-get remove r-other-chbutils
Uninstall r-other-chbutils And Its Dependencies
To uninstall r-other-chbutils and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-other-chbutils
Remove r-other-chbutils Configurations and Data
To remove r-other-chbutils configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-other-chbutils
Remove r-other-chbutils configuration, data, and all of its dependencies
We can use the following command to remove r-other-chbutils configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-other-chbutils
Dependencies
r-other-chbutils have the following dependencies:
References
Summary
In this tutorial we learn how to install r-other-chbutils package on Debian 12 using different package management tools: apt, apt-get and aptitude.
