How To Install r-bioc-affxparser on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-affxparser on Debian 12.
What is r-bioc-affxparser
r-bioc-affxparser is:
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix’ Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
There are three methods to install r-bioc-affxparser on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-affxparser Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-affxparser using apt-get by running the following command:
sudo apt-get -y install r-bioc-affxparser
Install r-bioc-affxparser Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-affxparser using apt by running the following command:
sudo apt -y install r-bioc-affxparser
Install r-bioc-affxparser Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-affxparser using aptitude by running the following command:
sudo aptitude -y install r-bioc-affxparser
How To Uninstall r-bioc-affxparser on Debian 12
To uninstall only the r-bioc-affxparser package we can use the following command:
sudo apt-get remove r-bioc-affxparser
Uninstall r-bioc-affxparser And Its Dependencies
To uninstall r-bioc-affxparser and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-affxparser
Remove r-bioc-affxparser Configurations and Data
To remove r-bioc-affxparser configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-affxparser
Remove r-bioc-affxparser configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-affxparser configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-affxparser
Dependencies
r-bioc-affxparser have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-affxparser package on Debian 12 using different package management tools: apt, apt-get and aptitude.
