How To Install libsnpsift-java-doc on Debian 12
Introduction
In this tutorial we learn how to install libsnpsift-java-doc on Debian 12.
What is libsnpsift-java-doc
libsnpsift-java-doc is:
SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the “interesting / relevant variants”. Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines.
This package contains the API documentation of libsnpsift-java.
There are three methods to install libsnpsift-java-doc on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libsnpsift-java-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libsnpsift-java-doc using apt-get by running the following command:
sudo apt-get -y install libsnpsift-java-doc
Install libsnpsift-java-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libsnpsift-java-doc using apt by running the following command:
sudo apt -y install libsnpsift-java-doc
Install libsnpsift-java-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libsnpsift-java-doc using aptitude by running the following command:
sudo aptitude -y install libsnpsift-java-doc
How To Uninstall libsnpsift-java-doc on Debian 12
To uninstall only the libsnpsift-java-doc package we can use the following command:
sudo apt-get remove libsnpsift-java-doc
Uninstall libsnpsift-java-doc And Its Dependencies
To uninstall libsnpsift-java-doc and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove libsnpsift-java-doc
Remove libsnpsift-java-doc Configurations and Data
To remove libsnpsift-java-doc configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge libsnpsift-java-doc
Remove libsnpsift-java-doc configuration, data, and all of its dependencies
We can use the following command to remove libsnpsift-java-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libsnpsift-java-doc
Dependencies
libsnpsift-java-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install libsnpsift-java-doc package on Debian 12 using different package management tools: apt, apt-get and aptitude.
