How To Install adapterremoval-examples on Debian 9
Introduction
In this tutorial we learn how to install adapterremoval-examples on Debian 9.
What is adapterremoval-examples
adapterremoval-examples is:
This program searches for and removes remnant adapter sequences from High- Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3’ end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, the AdapterRemoval may be used to recover a consensus adapter sequence for paired-ended data, for which this information is not available.
This package provides the example data.
There are three methods to install adapterremoval-examples on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install adapterremoval-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install adapterremoval-examples using apt-get by running the following command:
sudo apt-get -y install adapterremoval-examples
Install adapterremoval-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install adapterremoval-examples using apt by running the following command:
sudo apt -y install adapterremoval-examples
Install adapterremoval-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install adapterremoval-examples using aptitude by running the following command:
sudo aptitude -y install adapterremoval-examples
How To Uninstall adapterremoval-examples on Debian 9
To uninstall only the adapterremoval-examples package we can use the following command:
sudo apt-get remove adapterremoval-examples
Uninstall adapterremoval-examples And Its Dependencies
To uninstall adapterremoval-examples and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove adapterremoval-examples
Remove adapterremoval-examples Configurations and Data
To remove adapterremoval-examples configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge adapterremoval-examples
Remove adapterremoval-examples configuration, data, and all of its dependencies
We can use the following command to remove adapterremoval-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge adapterremoval-examples
Dependencies
adapterremoval-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install adapterremoval-examples package on Debian 9 using different package management tools: apt, apt-get and aptitude.