How To Install r-bioc-scuttle on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-scuttle on Debian 12.
What is r-bioc-scuttle
r-bioc-scuttle is:
Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.
There are three methods to install r-bioc-scuttle on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-scuttle Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-scuttle using apt-get by running the following command:
sudo apt-get -y install r-bioc-scuttle
Install r-bioc-scuttle Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-scuttle using apt by running the following command:
sudo apt -y install r-bioc-scuttle
Install r-bioc-scuttle Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-scuttle using aptitude by running the following command:
sudo aptitude -y install r-bioc-scuttle
How To Uninstall r-bioc-scuttle on Debian 12
To uninstall only the r-bioc-scuttle package we can use the following command:
sudo apt-get remove r-bioc-scuttle
Uninstall r-bioc-scuttle And Its Dependencies
To uninstall r-bioc-scuttle and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-scuttle
Remove r-bioc-scuttle Configurations and Data
To remove r-bioc-scuttle configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-scuttle
Remove r-bioc-scuttle configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-scuttle configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-scuttle
Dependencies
r-bioc-scuttle have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-singlecellexperiment
- r-cran-matrix
- r-cran-rcpp
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-biocparallel
- r-bioc-genomicranges
- r-bioc-summarizedexperiment
- r-bioc-delayedarray
- r-bioc-delayedmatrixstats
- r-bioc-beachmat
- libc6
- libgcc-s1
- liblapack3
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-scuttle package on Debian 12 using different package management tools: apt, apt-get and aptitude.
