How To Install r-bioc-genomicranges on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-genomicranges
on Debian 12.
What is r-bioc-genomicranges
r-bioc-genomicranges is:
The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.
There are three methods to install r-bioc-genomicranges
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-genomicranges Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-genomicranges
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-genomicranges
Install r-bioc-genomicranges Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-genomicranges
using apt
by running the following command:
sudo apt -y install r-bioc-genomicranges
Install r-bioc-genomicranges Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-genomicranges
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-genomicranges
How To Uninstall r-bioc-genomicranges on Debian 12
To uninstall only the r-bioc-genomicranges
package we can use the following command:
sudo apt-get remove r-bioc-genomicranges
Uninstall r-bioc-genomicranges And Its Dependencies
To uninstall r-bioc-genomicranges
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-genomicranges
Remove r-bioc-genomicranges Configurations and Data
To remove r-bioc-genomicranges
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-genomicranges
Remove r-bioc-genomicranges configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-genomicranges
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-genomicranges
Dependencies
r-bioc-genomicranges have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-genomeinfodb
- r-bioc-xvector
- libc6
References
Summary
In this tutorial we learn how to install r-bioc-genomicranges
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.