How To Install r-bioc-summarizedexperiment on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-summarizedexperiment on Debian 12.
What is r-bioc-summarizedexperiment
r-bioc-summarizedexperiment is:
The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
There are three methods to install r-bioc-summarizedexperiment on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-summarizedexperiment Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-summarizedexperiment using apt-get by running the following command:
sudo apt-get -y install r-bioc-summarizedexperiment
Install r-bioc-summarizedexperiment Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-summarizedexperiment using apt by running the following command:
sudo apt -y install r-bioc-summarizedexperiment
Install r-bioc-summarizedexperiment Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-summarizedexperiment using aptitude by running the following command:
sudo aptitude -y install r-bioc-summarizedexperiment
How To Uninstall r-bioc-summarizedexperiment on Debian 12
To uninstall only the r-bioc-summarizedexperiment package we can use the following command:
sudo apt-get remove r-bioc-summarizedexperiment
Uninstall r-bioc-summarizedexperiment And Its Dependencies
To uninstall r-bioc-summarizedexperiment and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-summarizedexperiment
Remove r-bioc-summarizedexperiment Configurations and Data
To remove r-bioc-summarizedexperiment configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-summarizedexperiment
Remove r-bioc-summarizedexperiment configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-summarizedexperiment configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-summarizedexperiment
Dependencies
r-bioc-summarizedexperiment have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-matrixgenerics
- r-bioc-genomicranges
- r-bioc-biobase
- r-cran-matrix
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-genomeinfodb
- r-bioc-delayedarray
References
Summary
In this tutorial we learn how to install r-bioc-summarizedexperiment package on Debian 12 using different package management tools: apt, apt-get and aptitude.
