How To Install r-bioc-singlecellexperiment on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-singlecellexperiment on Debian 12.
What is r-bioc-singlecellexperiment
r-bioc-singlecellexperiment is:
Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.
There are three methods to install r-bioc-singlecellexperiment on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-singlecellexperiment Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-singlecellexperiment using apt-get by running the following command:
sudo apt-get -y install r-bioc-singlecellexperiment
Install r-bioc-singlecellexperiment Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-singlecellexperiment using apt by running the following command:
sudo apt -y install r-bioc-singlecellexperiment
Install r-bioc-singlecellexperiment Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-singlecellexperiment using aptitude by running the following command:
sudo aptitude -y install r-bioc-singlecellexperiment
How To Uninstall r-bioc-singlecellexperiment on Debian 12
To uninstall only the r-bioc-singlecellexperiment package we can use the following command:
sudo apt-get remove r-bioc-singlecellexperiment
Uninstall r-bioc-singlecellexperiment And Its Dependencies
To uninstall r-bioc-singlecellexperiment and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-singlecellexperiment
Remove r-bioc-singlecellexperiment Configurations and Data
To remove r-bioc-singlecellexperiment configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-singlecellexperiment
Remove r-bioc-singlecellexperiment configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-singlecellexperiment configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-singlecellexperiment
Dependencies
r-bioc-singlecellexperiment have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-summarizedexperiment
- r-bioc-s4vectors
- r-bioc-biocgenerics
- r-bioc-genomicranges
- r-bioc-delayedarray
References
Summary
In this tutorial we learn how to install r-bioc-singlecellexperiment package on Debian 12 using different package management tools: apt, apt-get and aptitude.
