How To Install R-qvalue on Fedora 36
Introduction
In this tutorial we learn how to install R-qvalue on Fedora 36.
What is R-qvalue
It takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining. This package is a part of the Bioconductor (bioconductor.org) project.
We can use yum or dnf to install R-qvalue on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-qvalue.
Install R-qvalue on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install R-qvalue using dnf by running the following command:
sudo dnf -y install R-qvalue
Install R-qvalue on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install R-qvalue using yum by running the following command:
sudo yum -y install R-qvalue
How To Uninstall R-qvalue on Fedora 36
To uninstall only the R-qvalue package we can use the following command:
sudo dnf remove R-qvalue
R-qvalue Package Contents on Fedora 36
/usr/share/R/library/qvalue
/usr/share/R/library/qvalue/DESCRIPTION
/usr/share/R/library/qvalue/INDEX
/usr/share/R/library/qvalue/Meta
/usr/share/R/library/qvalue/Meta/Rd.rds
/usr/share/R/library/qvalue/Meta/data.rds
/usr/share/R/library/qvalue/Meta/features.rds
/usr/share/R/library/qvalue/Meta/hsearch.rds
/usr/share/R/library/qvalue/Meta/links.rds
/usr/share/R/library/qvalue/Meta/nsInfo.rds
/usr/share/R/library/qvalue/Meta/package.rds
/usr/share/R/library/qvalue/Meta/vignette.rds
/usr/share/R/library/qvalue/NAMESPACE
/usr/share/R/library/qvalue/NEWS
/usr/share/R/library/qvalue/R
/usr/share/R/library/qvalue/R/qvalue
/usr/share/R/library/qvalue/R/qvalue.rdb
/usr/share/R/library/qvalue/R/qvalue.rdx
/usr/share/R/library/qvalue/data
/usr/share/R/library/qvalue/data/datalist
/usr/share/R/library/qvalue/data/hedenfalk.RData
/usr/share/R/library/qvalue/doc
/usr/share/R/library/qvalue/doc/index.html
/usr/share/R/library/qvalue/doc/qvalue.R
/usr/share/R/library/qvalue/doc/qvalue.Rnw
/usr/share/R/library/qvalue/doc/qvalue.pdf
/usr/share/R/library/qvalue/help
/usr/share/R/library/qvalue/help/AnIndex
/usr/share/R/library/qvalue/help/aliases.rds
/usr/share/R/library/qvalue/help/empPvals.html
/usr/share/R/library/qvalue/help/hedenfalk.html
/usr/share/R/library/qvalue/help/hist+2C.html
/usr/share/R/library/qvalue/help/hist.qvalue.html
/usr/share/R/library/qvalue/help/lfdr.html
/usr/share/R/library/qvalue/help/paths.rds
/usr/share/R/library/qvalue/help/pi0est.html
/usr/share/R/library/qvalue/help/plot+2C.html
/usr/share/R/library/qvalue/help/plot.qvalue.html
/usr/share/R/library/qvalue/help/qvalue.html
/usr/share/R/library/qvalue/help/qvalue.rdb
/usr/share/R/library/qvalue/help/qvalue.rdx
/usr/share/R/library/qvalue/help/summary+2C.html
/usr/share/R/library/qvalue/help/summary.qvalue.html
/usr/share/R/library/qvalue/help/write.qvalue.html
/usr/share/R/library/qvalue/html
/usr/share/R/library/qvalue/html/00Index.html
/usr/share/R/library/qvalue/html/R.css
/usr/share/R/library/qvalue/html/empPvals.html
/usr/share/R/library/qvalue/html/hedenfalk.html
/usr/share/R/library/qvalue/html/hist.qvalue.html
/usr/share/R/library/qvalue/html/lfdr.html
/usr/share/R/library/qvalue/html/pi0est.html
/usr/share/R/library/qvalue/html/plot.qvalue.html
/usr/share/R/library/qvalue/html/qvalue.html
/usr/share/R/library/qvalue/html/summary.qvalue.html
/usr/share/R/library/qvalue/html/write.qvalue.html
References
Summary
In this tutorial we learn how to install R-qvalue on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
