How To Install R-BiocIO on Fedora 36

In this tutorial we learn how to install R-BiocIO in Fedora 36. R-BiocIO is Standard Input and Output for Bioconductor Packages

Introduction

In this tutorial we learn how to install R-BiocIO on Fedora 36.

What is `R-BiocIO`

Implements import() and export() standard generics for importing and exporting biological data formats. import() supports whole-file as well as chunk-wise iterative import. The import() interface optionally provides a standard mechanism for ’lazy’ access via filter() (on row or element-like components of the file resource), select() (on column-like components of the file resource) and collect(). The import() interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., .loom for dispatch from character-based URIs to specific import() / export() methods based on classes representing file types, e.g., LoomFile().

We can use yum or dnf to install R-BiocIO on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install R-BiocIO.

Install R-BiocIO on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install R-BiocIO using dnf by running the following command:

sudo dnf -y install R-BiocIO

Install R-BiocIO on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install R-BiocIO using yum by running the following command:

sudo yum -y install R-BiocIO

How To Uninstall R-BiocIO on Fedora 36

To uninstall only the R-BiocIO package we can use the following command:

sudo dnf remove R-BiocIO

R-BiocIO Package Contents on Fedora 36

/usr/share/R/library/BiocIO
/usr/share/R/library/BiocIO/DESCRIPTION
/usr/share/R/library/BiocIO/INDEX
/usr/share/R/library/BiocIO/Meta
/usr/share/R/library/BiocIO/Meta/Rd.rds
/usr/share/R/library/BiocIO/Meta/features.rds
/usr/share/R/library/BiocIO/Meta/hsearch.rds
/usr/share/R/library/BiocIO/Meta/links.rds
/usr/share/R/library/BiocIO/Meta/nsInfo.rds
/usr/share/R/library/BiocIO/Meta/package.rds
/usr/share/R/library/BiocIO/Meta/vignette.rds
/usr/share/R/library/BiocIO/NAMESPACE
/usr/share/R/library/BiocIO/R
/usr/share/R/library/BiocIO/R/BiocIO
/usr/share/R/library/BiocIO/R/BiocIO.rdb
/usr/share/R/library/BiocIO/R/BiocIO.rdx
/usr/share/R/library/BiocIO/doc
/usr/share/R/library/BiocIO/doc/BiocIO.R
/usr/share/R/library/BiocIO/doc/BiocIO.Rmd
/usr/share/R/library/BiocIO/doc/BiocIO.html
/usr/share/R/library/BiocIO/doc/index.html
/usr/share/R/library/BiocIO/help
/usr/share/R/library/BiocIO/help/AnIndex
/usr/share/R/library/BiocIO/help/BiocFile-class.html
/usr/share/R/library/BiocIO/help/BiocFileList-class.html
/usr/share/R/library/BiocIO/help/BiocFileList.html
/usr/share/R/library/BiocIO/help/BiocIO.rdb
/usr/share/R/library/BiocIO/help/BiocIO.rdx
/usr/share/R/library/BiocIO/help/CompressedFile-class.html
/usr/share/R/library/BiocIO/help/FileForFormat.html
/usr/share/R/library/BiocIO/help/aliases.rds
/usr/share/R/library/BiocIO/help/as.character+2CBiocFile-method.html
/usr/share/R/library/BiocIO/help/bestFileFormat+2CGRangesList-method.html
/usr/share/R/library/BiocIO/help/bestFileFormat+2CGenomicRanges-method.html
/usr/share/R/library/BiocIO/help/bestFileFormat+2CIntegerRangesList-method.html
/usr/share/R/library/BiocIO/help/bestFileFormat+2CRleList-method.html
/usr/share/R/library/BiocIO/help/bestFileFormat.html
/usr/share/R/library/BiocIO/help/class+3ABiocFile.html
/usr/share/R/library/BiocIO/help/class+3ACompressedFile.html
/usr/share/R/library/BiocIO/help/decompress+2CANY-method.html
/usr/share/R/library/BiocIO/help/decompress+2CCompressedFile-method.html
/usr/share/R/library/BiocIO/help/decompress+2CGZFile-method.html
/usr/share/R/library/BiocIO/help/decompress+2Ccharacter-method.html
/usr/share/R/library/BiocIO/help/decompress.html
/usr/share/R/library/BiocIO/help/export+2CANY+2CCompressedFile+2Cmissing-method.html
/usr/share/R/library/BiocIO/help/export+2CANY+2Ccharacter+2Ccharacter-method.html
/usr/share/R/library/BiocIO/help/export+2CANY+2Ccharacter+2Cmissing-method.html
/usr/share/R/library/BiocIO/help/export+2CANY+2Cconnection+2Ccharacter-method.html
/usr/share/R/library/BiocIO/help/export+2CANY+2Cconnection+2Cmissing-method.html
/usr/share/R/library/BiocIO/help/export+2CANY+2Cmissing+2Ccharacter-method.html
/usr/share/R/library/BiocIO/help/export.html
/usr/share/R/library/BiocIO/help/fileFormat+2CBiocFile-method.html
/usr/share/R/library/BiocIO/help/fileFormat+2CCompressedFile-method.html
/usr/share/R/library/BiocIO/help/fileFormat+2Ccharacter-method.html
/usr/share/R/library/BiocIO/help/fileFormat.html
/usr/share/R/library/BiocIO/help/import+2CCompressedFile+2Cmissing+2CANY-method.html
/usr/share/R/library/BiocIO/help/import+2Ccharacter+2Ccharacter+2CANY-method.html
/usr/share/R/library/BiocIO/help/import+2Ccharacter+2Cmissing+2CANY-method.html
/usr/share/R/library/BiocIO/help/import+2Cconnection+2Ccharacter+2CANY-method.html
/usr/share/R/library/BiocIO/help/import+2Cconnection+2Cmissing+2CANY-method.html
/usr/share/R/library/BiocIO/help/import+2Cmissing+2CANY+2Ccharacter-method.html
/usr/share/R/library/BiocIO/help/import.html
/usr/share/R/library/BiocIO/help/path+2CBiocFile-method.html
/usr/share/R/library/BiocIO/help/path.html
/usr/share/R/library/BiocIO/help/paths.rds
/usr/share/R/library/BiocIO/help/resource+3C-.html
/usr/share/R/library/BiocIO/help/resource.html
/usr/share/R/library/BiocIO/help/show+2CBiocFile-method.html
/usr/share/R/library/BiocIO/html
/usr/share/R/library/BiocIO/html/00Index.html
/usr/share/R/library/BiocIO/html/BiocFile-class.html
/usr/share/R/library/BiocIO/html/R.css
/usr/share/R/library/BiocIO/html/export.html

References

R-BiocIO website

Summary

In this tutorial we learn how to install R-BiocIO on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).