How To Install python3-lfpykit on Fedora 36
Introduction
In this tutorial we learn how to install python3-lfpykit on Fedora 36.
What is python3-lfpykit
This Python module contain freestanding implementations of electrostatic forward models incorporated in LFPy (https https The aim of the LFPykit module is to provide electrostatic models in a manner that facilitates forward-model predictions of extracellular potentials and related measures from multicompartment neuron models, but without explicit dependencies on neural simulation software such as NEURON (https (https LFPy. The LFPykit module can then be more easily incorporated with these simulators, or in various projects that utilize them such as LFPy (https (https https Its main functionality is providing class methods that return two-dimensional linear transformation matrices M between transmembrane currents I of multicompartment neuron models and some measurement Y given by Y=MI. The presently incorporated volume conductor models have been incorporated in LFPy (https various papers and books - Linden H, Hagen E, Leski S, Norheim ES, Pettersen KH, Einevoll GT (2014) LFPy a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. Front. Neuroinform. 7 - Hagen E, Næss S, Ness TV and Einevoll GT (2018) Multimodal Modeling of Neural Network Activity Front. Neuroinform. 12 - Ness, T. V., Chintaluri, C., Potworowski, J., Leski, S., Glabska, H., Wójcik, D. K., et al. (2015). Modelling and analysis of electrical potentials recorded in microelectrode arrays (MEAs). Neuroinformatics 13 10.1007/s12021-015-9265-6 - Nunez and Srinivasan, Oxford University Press, 2006 - Næss S, Chintaluri C, Ness TV, Dale AM, Einevoll GT and Wójcik DK (2017). Corrected Four-sphere Head Model for EEG Signals. Front. Hum. Neurosci. 11 doi
We can use yum or dnf to install python3-lfpykit on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install python3-lfpykit.
Install python3-lfpykit on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install python3-lfpykit using dnf by running the following command:
sudo dnf -y install python3-lfpykit
Install python3-lfpykit on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install python3-lfpykit using yum by running the following command:
sudo yum -y install python3-lfpykit
How To Uninstall python3-lfpykit on Fedora 36
To uninstall only the python3-lfpykit package we can use the following command:
sudo dnf remove python3-lfpykit
python3-lfpykit Package Contents on Fedora 36
/usr/lib/python3.10/site-packages/LFPykit-0.4.dist-info
/usr/lib/python3.10/site-packages/LFPykit-0.4.dist-info/INSTALLER
/usr/lib/python3.10/site-packages/LFPykit-0.4.dist-info/LICENSE
/usr/lib/python3.10/site-packages/LFPykit-0.4.dist-info/METADATA
/usr/lib/python3.10/site-packages/LFPykit-0.4.dist-info/WHEEL
/usr/lib/python3.10/site-packages/LFPykit-0.4.dist-info/top_level.txt
/usr/lib/python3.10/site-packages/lfpykit
/usr/lib/python3.10/site-packages/lfpykit/__init__.py
/usr/lib/python3.10/site-packages/lfpykit/__pycache__
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/cellgeometry.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/cellgeometry.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/eegmegcalc.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/eegmegcalc.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/lfpcalc.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/lfpcalc.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/models.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/models.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/version.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/__pycache__/version.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/cellgeometry.py
/usr/lib/python3.10/site-packages/lfpykit/eegmegcalc.py
/usr/lib/python3.10/site-packages/lfpykit/lfpcalc.py
/usr/lib/python3.10/site-packages/lfpykit/models.py
/usr/lib/python3.10/site-packages/lfpykit/tests
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__/test_eegmegcalc.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__/test_eegmegcalc.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__/test_lfpcalc.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__/test_lfpcalc.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__/test_module.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/lfpykit/tests/__pycache__/test_module.cpython-310.pyc
/usr/lib/python3.10/site-packages/lfpykit/tests/fem_mix_dip.npz
/usr/lib/python3.10/site-packages/lfpykit/tests/test_eegmegcalc.py
/usr/lib/python3.10/site-packages/lfpykit/tests/test_lfpcalc.py
/usr/lib/python3.10/site-packages/lfpykit/tests/test_module.py
/usr/lib/python3.10/site-packages/lfpykit/version.py
/usr/share/doc/python3-lfpykit
/usr/share/doc/python3-lfpykit/README.md
References
Summary
In this tutorial we learn how to install python3-lfpykit on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).
