How To Install glimmer on Fedora 36
Introduction
In this tutorial we learn how to install glimmer
on Fedora 36.
What is glimmer
Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. Glimmer (Gene Locator and Interpolated Markov ModelER) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.
We can use yum
or dnf
to install glimmer
on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install glimmer.
Install glimmer on Fedora 36 Using dnf
Update yum database with dnf
using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install glimmer
using dnf
by running the following command:
sudo dnf -y install glimmer
Install glimmer on Fedora 36 Using yum
Update yum database with yum
using the following command.
sudo yum makecache --refresh
After updating yum database, We can install glimmer
using yum
by running the following command:
sudo yum -y install glimmer
How To Uninstall glimmer on Fedora 36
To uninstall only the glimmer
package we can use the following command:
sudo dnf remove glimmer
glimmer Package Contents on Fedora 36
/usr/bin/g3-from-scratch.csh
/usr/bin/g3-from-training.csh
/usr/bin/g3-iterated.csh
/usr/bin/glimmer3
/usr/lib/.build-id
/usr/lib/.build-id/0b
/usr/lib/.build-id/0b/67c6c249897206755e48b4dbde943d06048c5e
/usr/lib/.build-id/1b
/usr/lib/.build-id/1b/1aa4e2d49da9a65c7be586b633dd8429397b7d
/usr/lib/.build-id/27
/usr/lib/.build-id/27/4e1ef3d7ff5f059773e864cb0b84fafaec7743
/usr/lib/.build-id/2e
/usr/lib/.build-id/2e/e3c2549e39ea082e91dbcb379b44644c25f43f
/usr/lib/.build-id/4f
/usr/lib/.build-id/4f/4e630ba64e7995f7cc5ed348a8131d6ebd9a97
/usr/lib/.build-id/51
/usr/lib/.build-id/51/bf74756d486c2e88090ca2d09030849d508753
/usr/lib/.build-id/51/e799606e8b257129621e458b2663b401141141
/usr/lib/.build-id/6b
/usr/lib/.build-id/6b/50b67bafb897794bbbd1cae249483b3e67f3e5
/usr/lib/.build-id/6d
/usr/lib/.build-id/6d/589d77db325d5b58308d70a893e0396393ae2c
/usr/lib/.build-id/8a
/usr/lib/.build-id/8a/47e9dab3b20d5bb407b24cfdd77d508901427b
/usr/lib/.build-id/9b
/usr/lib/.build-id/9b/f8d438bdfc2ca0a6843942269149f7cb4f8975
/usr/lib/.build-id/a4
/usr/lib/.build-id/a4/fd7534c4e6077f519cf6899e55fed0d0a5658b
/usr/lib/.build-id/e1
/usr/lib/.build-id/e1/166cf95a993beba5cca1eb8026216fc1bc2203
/usr/libexec/glimmer3
/usr/libexec/glimmer3/anomaly
/usr/libexec/glimmer3/build-fixed
/usr/libexec/glimmer3/build-icm
/usr/libexec/glimmer3/entropy-profile
/usr/libexec/glimmer3/entropy-score
/usr/libexec/glimmer3/extract
/usr/libexec/glimmer3/glimmer3
/usr/libexec/glimmer3/long-orfs
/usr/libexec/glimmer3/multi-extract
/usr/libexec/glimmer3/score-fixed
/usr/libexec/glimmer3/start-codon-distrib
/usr/libexec/glimmer3/uncovered
/usr/libexec/glimmer3/window-acgt
/usr/share/doc/glimmer
/usr/share/doc/glimmer/LICENSE
/usr/share/doc/glimmer/glim302notes.pdf
/usr/share/doc/glimmer/sample-run
/usr/share/doc/glimmer/sample-run/from-scratch.detail
/usr/share/doc/glimmer/sample-run/from-scratch.icm
/usr/share/doc/glimmer/sample-run/from-scratch.longorfs
/usr/share/doc/glimmer/sample-run/from-scratch.predict
/usr/share/doc/glimmer/sample-run/from-scratch.train
/usr/share/doc/glimmer/sample-run/from-training.detail
/usr/share/doc/glimmer/sample-run/from-training.icm
/usr/share/doc/glimmer/sample-run/from-training.motif
/usr/share/doc/glimmer/sample-run/from-training.predict
/usr/share/doc/glimmer/sample-run/from-training.train
/usr/share/doc/glimmer/sample-run/from-training.upstream
/usr/share/doc/glimmer/sample-run/iterated.coords
/usr/share/doc/glimmer/sample-run/iterated.detail
/usr/share/doc/glimmer/sample-run/iterated.icm
/usr/share/doc/glimmer/sample-run/iterated.longorfs
/usr/share/doc/glimmer/sample-run/iterated.motif
/usr/share/doc/glimmer/sample-run/iterated.predict
/usr/share/doc/glimmer/sample-run/iterated.run1.detail
/usr/share/doc/glimmer/sample-run/iterated.run1.predict
/usr/share/doc/glimmer/sample-run/iterated.train
/usr/share/doc/glimmer/sample-run/iterated.upstream
/usr/share/doc/glimmer/sample-run/tpall.fna
/usr/share/doc/glimmer/sample-run/tpall.nh
/usr/share/glimmer3
/usr/share/glimmer3/get-motif-counts.awk
/usr/share/glimmer3/glim-diff.awk
/usr/share/glimmer3/match-list-col.awk
/usr/share/glimmer3/not-acgt.awk
/usr/share/glimmer3/upstream-coords.awk
References
Summary
In this tutorial we learn how to install glimmer
on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).