How To Install fastx_toolkit-galaxy on Fedora 36

In this tutorial we learn how to install fastx_toolkit-galaxy in Fedora 36. fastx_toolkit-galaxy is Integrate fastx_toolkit with a local Galaxy installation

Introduction

In this tutorial we learn how to install fastx_toolkit-galaxy on Fedora 36.

What is `fastx_toolkit-galaxy`

These files allow the integration of fastx_toolkit with a local installation of Galaxy (http platform for analyzing multiple alignments, comparing genomic annotations, profiling metagenomic samples and much more.

We can use yum or dnf to install fastx_toolkit-galaxy on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install fastx_toolkit-galaxy.

Install fastx_toolkit-galaxy on Fedora 36 Using dnf

Update yum database with dnf using the following command.

sudo dnf makecache --refresh

After updating yum database, We can install fastx_toolkit-galaxy using dnf by running the following command:

sudo dnf -y install fastx_toolkit-galaxy

Install fastx_toolkit-galaxy on Fedora 36 Using yum

Update yum database with yum using the following command.

sudo yum makecache --refresh

After updating yum database, We can install fastx_toolkit-galaxy using yum by running the following command:

sudo yum -y install fastx_toolkit-galaxy

How To Uninstall fastx_toolkit-galaxy on Fedora 36

To uninstall only the fastx_toolkit-galaxy package we can use the following command:

sudo dnf remove fastx_toolkit-galaxy

fastx_toolkit-galaxy Package Contents on Fedora 36

/usr/share/fastx_toolkit
/usr/share/fastx_toolkit/galaxy
/usr/share/fastx_toolkit/galaxy/Makefile
/usr/share/fastx_toolkit/galaxy/README
/usr/share/fastx_toolkit/galaxy/fastx_toolkit_conf.xml
/usr/share/fastx_toolkit/galaxy/static
/usr/share/fastx_toolkit/galaxy/static/Makefile
/usr/share/fastx_toolkit/galaxy/static/fastx_icons
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/Makefile
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/barcode_splitter_output_example.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_1.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_2.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_3.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_4.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_1.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_2.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_3.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_4.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_line_graph.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_quality_boxplot_1.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_quality_boxplot_2.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_quality_boxplot_3.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastx_clipper_example.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastx_clipper_illustration.png
/usr/share/fastx_toolkit/galaxy/test-data
/usr/share/fastx_toolkit/galaxy/test-data/Makefile
/usr/share/fastx_toolkit/galaxy/test-data/fasta_collapser1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_collapser1.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_formatter1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_formatter1.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_formatter2.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer1.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer2.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv2n.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_filter1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_filter1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_filter1b.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_stats1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_stats1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_to_fasta1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_to_fasta1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_to_fasta1b.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_barcode_splitter1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_barcode_splitter1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_barcode_splitter1.txt
/usr/share/fastx_toolkit/galaxy/test-data/fastx_clipper1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_clipper1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_rev_comp1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fastx_rev_comp2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_reverse_complement1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_reverse_complement2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer2.out
/usr/share/fastx_toolkit/galaxy/tool-data
/usr/share/fastx_toolkit/galaxy/tool-data/Makefile
/usr/share/fastx_toolkit/galaxy/tool-data/fastx_clipper_sequences.txt
/usr/share/fastx_toolkit/galaxy/tools
/usr/share/fastx_toolkit/galaxy/tools/Makefile
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/Makefile
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fasta_clipping_histogram.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fasta_formatter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fasta_nucleotide_changer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_masker.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_boxplot.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_converter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_filter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_trimmer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_to_fasta.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_artifacts_filter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_barcode_splitter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_clipper.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_collapser.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_nucleotides_distribution.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_nucleotides_distribution_line.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_quality_statistics.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_renamer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_reverse_complement.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_trimmer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_trimmer_from_end.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_uncollapser.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/seqid_uncollapser.xml

References

fastx_toolkit-galaxy website

Summary

In this tutorial we learn how to install fastx_toolkit-galaxy on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).