How To Install COPASI on Fedora 34
Introduction
In this tutorial we learn how to install COPASI on Fedora 34.
What is COPASI
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie’s stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI carries out several analyses of the network and its dynamics and has extensive support for parameter estimation and optimization. COPASI provides means to visualize data in customizable plots, histograms and animations of network diagrams.
We can use yum or dnf to install COPASI on Fedora 34. In this tutorial we discuss both methods but you only need to choose one of method to install COPASI.
Install COPASI on Fedora 34 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install COPASI using dnf by running the following command:
sudo dnf -y install COPASI
Install COPASI on Fedora 34 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
The output should look something like this:
Fedora 34 - x86_64 20 kB/s | 6.6 kB 00:00
Fedora 34 openh264 (From Cisco) - x86_64 1.4 kB/s | 989 B 00:00
Fedora Modular 34 - x86_64 68 kB/s | 6.5 kB 00:00
Fedora 34 - x86_64 - Updates 3.5 kB/s | 6.2 kB 00:01
Fedora Modular 34 - x86_64 - Updates 17 kB/s | 5.9 kB 00:00
Metadata cache created.
After updating yum database, We can install COPASI using yum by running the following command:
sudo yum -y install COPASI
How To Uninstall COPASI on Fedora 34
To uninstall only the COPASI package we can use the following command:
sudo dnf remove COPASI
COPASI Package Contents on Fedora 34
/usr/bin/CopasiSE
/usr/lib/.build-id
/usr/lib/.build-id/29
/usr/lib/.build-id/29/eaa2752a0ffa6abcd5af19572a54bf8103ed94
/usr/bin/CopasiSE
/usr/lib/.build-id
/usr/lib/.build-id/86
/usr/lib/.build-id/86/187998a09fa6bfeb9c85aca78a9f019b74e637
References
Summary
In this tutorial we learn how to install COPASI on Fedora 34 using yum and dnf.