How To Install r-bioc-singlecellexperiment on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-singlecellexperiment
on Debian 12.
What is r-bioc-singlecellexperiment
r-bioc-singlecellexperiment is:
Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.
There are three methods to install r-bioc-singlecellexperiment
on Debian 12. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-singlecellexperiment Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-singlecellexperiment
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-singlecellexperiment
Install r-bioc-singlecellexperiment Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-singlecellexperiment
using apt
by running the following command:
sudo apt -y install r-bioc-singlecellexperiment
Install r-bioc-singlecellexperiment Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-singlecellexperiment
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-singlecellexperiment
How To Uninstall r-bioc-singlecellexperiment on Debian 12
To uninstall only the r-bioc-singlecellexperiment
package we can use the following command:
sudo apt-get remove r-bioc-singlecellexperiment
Uninstall r-bioc-singlecellexperiment And Its Dependencies
To uninstall r-bioc-singlecellexperiment
and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-singlecellexperiment
Remove r-bioc-singlecellexperiment Configurations and Data
To remove r-bioc-singlecellexperiment
configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-singlecellexperiment
Remove r-bioc-singlecellexperiment configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-singlecellexperiment
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-singlecellexperiment
Dependencies
r-bioc-singlecellexperiment have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-summarizedexperiment
- r-bioc-s4vectors
- r-bioc-biocgenerics
- r-bioc-genomicranges
- r-bioc-delayedarray
References
Summary
In this tutorial we learn how to install r-bioc-singlecellexperiment
package on Debian 12 using different package management tools: apt
, apt-get
and aptitude
.