How To Install r-bioc-destiny on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-destiny on Debian 12.
What is r-bioc-destiny
r-bioc-destiny is:
This BioConductor package creates and plots diffusion maps.
There are three methods to install r-bioc-destiny on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-destiny Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-destiny using apt-get by running the following command:
sudo apt-get -y install r-bioc-destiny
Install r-bioc-destiny Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-destiny using apt by running the following command:
sudo apt -y install r-bioc-destiny
Install r-bioc-destiny Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-destiny using aptitude by running the following command:
sudo aptitude -y install r-bioc-destiny
How To Uninstall r-bioc-destiny on Debian 12
To uninstall only the r-bioc-destiny package we can use the following command:
sudo apt-get remove r-bioc-destiny
Uninstall r-bioc-destiny And Its Dependencies
To uninstall r-bioc-destiny and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-destiny
Remove r-bioc-destiny Configurations and Data
To remove r-bioc-destiny configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-destiny
Remove r-bioc-destiny configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-destiny configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-destiny
Dependencies
r-bioc-destiny have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-matrix
- r-cran-rcpp
- r-cran-rcppeigen
- r-cran-rspectra
- r-cran-irlba
- r-bioc-pcamethods
- r-bioc-biobase
- r-bioc-biocgenerics
- r-bioc-summarizedexperiment
- r-bioc-singlecellexperiment
- r-cran-ggplot2
- r-cran-ggplot.multistats
- r-cran-tidyr
- r-cran-tidyselect
- r-cran-ggthemes
- r-cran-vim
- r-cran-knn.covertree
- r-cran-proxy
- r-cran-rcpphnsw
- r-cran-smoother
- r-cran-scales
- r-cran-scatterplot3d
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-destiny package on Debian 12 using different package management tools: apt, apt-get and aptitude.
