How To Install r-bioc-degnorm on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-degnorm on Debian 12.
What is r-bioc-degnorm
r-bioc-degnorm is:
This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy.
There are three methods to install r-bioc-degnorm on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-degnorm Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-degnorm using apt-get by running the following command:
sudo apt-get -y install r-bioc-degnorm
Install r-bioc-degnorm Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-degnorm using apt by running the following command:
sudo apt -y install r-bioc-degnorm
Install r-bioc-degnorm Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-degnorm using aptitude by running the following command:
sudo aptitude -y install r-bioc-degnorm
How To Uninstall r-bioc-degnorm on Debian 12
To uninstall only the r-bioc-degnorm package we can use the following command:
sudo apt-get remove r-bioc-degnorm
Uninstall r-bioc-degnorm And Its Dependencies
To uninstall r-bioc-degnorm and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-degnorm
Remove r-bioc-degnorm Configurations and Data
To remove r-bioc-degnorm configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-degnorm
Remove r-bioc-degnorm configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-degnorm configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-degnorm
Dependencies
r-bioc-degnorm have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-rcpp
- r-bioc-genomicfeatures
- r-cran-foreach
- r-bioc-s4vectors
- r-cran-doparallel
- r-bioc-rsamtools
- r-bioc-genomicalignments
- r-cran-heatmaply
- r-cran-data.table
- r-cran-ggplot2
- r-bioc-genomicranges
- r-bioc-iranges
- r-cran-plyr
- r-cran-plotly
- r-cran-viridis
- r-cran-rcpparmadillo
- libblas3
- libc6
- libgcc-s1
- libgomp1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-degnorm package on Debian 12 using different package management tools: apt, apt-get and aptitude.
