How To Install cdbfasta on Ubuntu 22.04
Introduction
In this tutorial we learn how to install cdbfasta
on Ubuntu 22.04.
What is cdbfasta
cdbfasta is:
CDB (Constant DataBase) can be used for creating indices for quick retrieval of any particular sequences from large multi-FASTA files. It has the option to compress data records in order to save space.
There are three methods to install cdbfasta
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install cdbfasta Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install cdbfasta
using apt-get
by running the following command:
sudo apt-get -y install cdbfasta
Install cdbfasta Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install cdbfasta
using apt
by running the following command:
sudo apt -y install cdbfasta
Install cdbfasta Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install cdbfasta
using aptitude
by running the following command:
sudo aptitude -y install cdbfasta
How To Uninstall cdbfasta on Ubuntu 22.04
To uninstall only the cdbfasta
package we can use the following command:
sudo apt-get remove cdbfasta
Uninstall cdbfasta And Its Dependencies
To uninstall cdbfasta
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove cdbfasta
Remove cdbfasta Configurations and Data
To remove cdbfasta
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge cdbfasta
Remove cdbfasta configuration, data, and all of its dependencies
We can use the following command to remove cdbfasta
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge cdbfasta
References
Summary
In this tutorial we learn how to install cdbfasta
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.