How To Install murasaki on Ubuntu 22.04
Introduction
In this tutorial we learn how to install murasaki on Ubuntu 22.04.
What is murasaki
murasaki is:
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
- exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes))
- scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
- unlimited pattern length
- repeat tolerant
- intelligent noise reduction
There are three methods to install murasaki on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install murasaki Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install murasaki using apt-get by running the following command:
sudo apt-get -y install murasaki
Install murasaki Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install murasaki using apt by running the following command:
sudo apt -y install murasaki
Install murasaki Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install murasaki using aptitude by running the following command:
sudo aptitude -y install murasaki
How To Uninstall murasaki on Ubuntu 22.04
To uninstall only the murasaki package we can use the following command:
sudo apt-get remove murasaki
Uninstall murasaki And Its Dependencies
To uninstall murasaki and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove murasaki
Remove murasaki Configurations and Data
To remove murasaki configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge murasaki
Remove murasaki configuration, data, and all of its dependencies
We can use the following command to remove murasaki configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge murasaki
References
Summary
In this tutorial we learn how to install murasaki package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
