How To Install igdiscover on Ubuntu 22.04
Introduction
In this tutorial we learn how to install igdiscover
on Ubuntu 22.04.
What is igdiscover
igdiscover is:
IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).
There are three methods to install igdiscover
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install igdiscover Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install igdiscover
using apt-get
by running the following command:
sudo apt-get -y install igdiscover
Install igdiscover Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install igdiscover
using apt
by running the following command:
sudo apt -y install igdiscover
Install igdiscover Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install igdiscover
using aptitude
by running the following command:
sudo aptitude -y install igdiscover
How To Uninstall igdiscover on Ubuntu 22.04
To uninstall only the igdiscover
package we can use the following command:
sudo apt-get remove igdiscover
Uninstall igdiscover And Its Dependencies
To uninstall igdiscover
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove igdiscover
Remove igdiscover Configurations and Data
To remove igdiscover
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge igdiscover
Remove igdiscover configuration, data, and all of its dependencies
We can use the following command to remove igdiscover
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge igdiscover
References
Summary
In this tutorial we learn how to install igdiscover
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.