How To Install r-cran-bios2cor on Kali Linux
Introduction
In this tutorial we learn how to install r-cran-bios2cor on Kali Linux.
What is r-cran-bios2cor
r-cran-bios2cor is:
Analysis Utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation. Examples of sequence covariation analysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien P, Castel H, Chabbert M (2014) doi:10.1002/prot.24570 and (2) Taddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) <doi: 10.1371/journal.pcbi.1006209>. An example of side chain correlated motion analysis is provided in: Taddese B, Garnier A, Abdi H, Henrion D, Chabbert M (2020) <doi: 10.1038/s41598-020-72766- 1>. This work was supported by the French National Research Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant number: 100567).
There are three methods to install r-cran-bios2cor on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-bios2cor Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-cran-bios2cor using apt-get by running the following command:
sudo apt-get -y install r-cran-bios2corInstall r-cran-bios2cor Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-cran-bios2cor using apt by running the following command:
sudo apt -y install r-cran-bios2corInstall r-cran-bios2cor Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-cran-bios2cor using aptitude by running the following command:
sudo aptitude -y install r-cran-bios2corHow To Uninstall r-cran-bios2cor on Kali Linux
To uninstall only the r-cran-bios2cor package we can use the following command:
sudo apt-get remove r-cran-bios2corUninstall r-cran-bios2cor And Its Dependencies
To uninstall r-cran-bios2cor and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-cran-bios2corRemove r-cran-bios2cor Configurations and Data
To remove r-cran-bios2cor configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-cran-bios2corRemove r-cran-bios2cor configuration, data, and all of its dependencies
We can use the following command to remove r-cran-bios2cor configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-bios2corDependencies
r-cran-bios2cor have the following dependencies:
References
Summary
In this tutorial we learn how to install r-cran-bios2cor package on Kali Linux using different package management tools: apt, apt-get and aptitude.
