How To Install r-bioc-rsubread on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-rsubread on Kali Linux.
What is r-bioc-rsubread
r-bioc-rsubread is:
Alignment, quantification and analysis of second and third generation sequencing data. Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery.
Can be applied to all major sequencing techologies and to both short and long sequence reads.
There are three methods to install r-bioc-rsubread on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-rsubread Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-bioc-rsubread using apt-get by running the following command:
sudo apt-get -y install r-bioc-rsubreadInstall r-bioc-rsubread Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-bioc-rsubread using apt by running the following command:
sudo apt -y install r-bioc-rsubreadInstall r-bioc-rsubread Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-bioc-rsubread using aptitude by running the following command:
sudo aptitude -y install r-bioc-rsubreadHow To Uninstall r-bioc-rsubread on Kali Linux
To uninstall only the r-bioc-rsubread package we can use the following command:
sudo apt-get remove r-bioc-rsubreadUninstall r-bioc-rsubread And Its Dependencies
To uninstall r-bioc-rsubread and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-rsubreadRemove r-bioc-rsubread Configurations and Data
To remove r-bioc-rsubread configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-rsubreadRemove r-bioc-rsubread configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-rsubread configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-rsubreadDependencies
r-bioc-rsubread have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-rsubread package on Kali Linux using different package management tools: apt, apt-get and aptitude.
