How To Install liballelecount-perl on Kali Linux

Introduction

In this tutorial we learn how to install liballelecount-perl on Kali Linux.

What is liballelecount-perl

liballelecount-perl is:

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).

The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.

This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype.

There are three methods to install liballelecount-perl on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install liballelecount-perl Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install liballelecount-perl using apt-get by running the following command:

sudo apt-get -y install liballelecount-perl

Install liballelecount-perl Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install liballelecount-perl using apt by running the following command:

sudo apt -y install liballelecount-perl

Install liballelecount-perl Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install liballelecount-perl using aptitude by running the following command:

sudo aptitude -y install liballelecount-perl

How To Uninstall liballelecount-perl on Kali Linux

To uninstall only the liballelecount-perl package we can use the following command:

sudo apt-get remove liballelecount-perl

Uninstall liballelecount-perl And Its Dependencies

To uninstall liballelecount-perl and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove liballelecount-perl

Remove liballelecount-perl Configurations and Data

To remove liballelecount-perl configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge liballelecount-perl

Remove liballelecount-perl configuration, data, and all of its dependencies

We can use the following command to remove liballelecount-perl configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge liballelecount-perl

Dependencies

liballelecount-perl have the following dependencies:

• perl

References

• liballelecount-perl website

Summary

In this tutorial we learn how to install liballelecount-perl package on Kali Linux using different package management tools: apt, apt-get and aptitude.