How To Install disulfinder on Ubuntu 22.04
Introduction
In this tutorial we learn how to install disulfinder
on Ubuntu 22.04.
What is disulfinder
disulfinder is:
‘disulfinder’ is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks.
‘disulfinder’ predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern.
There are three methods to install disulfinder
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install disulfinder Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install disulfinder
using apt-get
by running the following command:
sudo apt-get -y install disulfinder
Install disulfinder Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install disulfinder
using apt
by running the following command:
sudo apt -y install disulfinder
Install disulfinder Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install disulfinder
using aptitude
by running the following command:
sudo aptitude -y install disulfinder
How To Uninstall disulfinder on Ubuntu 22.04
To uninstall only the disulfinder
package we can use the following command:
sudo apt-get remove disulfinder
Uninstall disulfinder And Its Dependencies
To uninstall disulfinder
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove disulfinder
Remove disulfinder Configurations and Data
To remove disulfinder
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge disulfinder
Remove disulfinder configuration, data, and all of its dependencies
We can use the following command to remove disulfinder
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge disulfinder
References
Summary
In this tutorial we learn how to install disulfinder
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.