How To Install xpore on Debian 12
Introduction
In this tutorial we learn how to install xpore on Debian 12.
What is xpore
xpore is:
RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives.
The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype.
There are three methods to install xpore on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install xpore Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install xpore using apt-get by running the following command:
sudo apt-get -y install xpore
Install xpore Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install xpore using apt by running the following command:
sudo apt -y install xpore
Install xpore Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install xpore using aptitude by running the following command:
sudo aptitude -y install xpore
How To Uninstall xpore on Debian 12
To uninstall only the xpore package we can use the following command:
sudo apt-get remove xpore
Uninstall xpore And Its Dependencies
To uninstall xpore and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove xpore
Remove xpore Configurations and Data
To remove xpore configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge xpore
Remove xpore configuration, data, and all of its dependencies
We can use the following command to remove xpore configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge xpore
Dependencies
xpore have the following dependencies:
- pyensembl
- python3-h5py-serial
- python3-numpy
- python3-pandas
- python3-scipy
- python3-ujson
- python3-yaml
- python3
References
Summary
In this tutorial we learn how to install xpore package on Debian 12 using different package management tools: apt, apt-get and aptitude.
