How To Install vt-examples on Ubuntu 22.04
Introduction
In this tutorial we learn how to install vt-examples
on Ubuntu 22.04.
What is vt-examples
vt-examples is:
vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
Vt-normalize is a tool to normalize representation of genetic variants in the VCF. Variant normalization is formally defined as the consistent representation of genetic variants in an unambiguous and concise way. In vt a simple general algorithm to enforce this is implemented.
This package contains some example data.
There are three methods to install vt-examples
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install vt-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install vt-examples
using apt-get
by running the following command:
sudo apt-get -y install vt-examples
Install vt-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install vt-examples
using apt
by running the following command:
sudo apt -y install vt-examples
Install vt-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install vt-examples
using aptitude
by running the following command:
sudo aptitude -y install vt-examples
How To Uninstall vt-examples on Ubuntu 22.04
To uninstall only the vt-examples
package we can use the following command:
sudo apt-get remove vt-examples
Uninstall vt-examples And Its Dependencies
To uninstall vt-examples
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove vt-examples
Remove vt-examples Configurations and Data
To remove vt-examples
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge vt-examples
Remove vt-examples configuration, data, and all of its dependencies
We can use the following command to remove vt-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge vt-examples
References
Summary
In this tutorial we learn how to install vt-examples
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.