How To Install virulencefinder on Ubuntu 22.04
Introduction
In this tutorial we learn how to install virulencefinder
on Ubuntu 22.04.
What is virulencefinder
virulencefinder is:
The VirulenceFinder service contains one Python script virulencefinder.py which is the script of the latest version of the VirulenceFinder service. VirulenceFinder identifies viruelnce genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available.
There are three methods to install virulencefinder
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install virulencefinder Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install virulencefinder
using apt-get
by running the following command:
sudo apt-get -y install virulencefinder
Install virulencefinder Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install virulencefinder
using apt
by running the following command:
sudo apt -y install virulencefinder
Install virulencefinder Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install virulencefinder
using aptitude
by running the following command:
sudo aptitude -y install virulencefinder
How To Uninstall virulencefinder on Ubuntu 22.04
To uninstall only the virulencefinder
package we can use the following command:
sudo apt-get remove virulencefinder
Uninstall virulencefinder And Its Dependencies
To uninstall virulencefinder
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove virulencefinder
Remove virulencefinder Configurations and Data
To remove virulencefinder
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge virulencefinder
Remove virulencefinder configuration, data, and all of its dependencies
We can use the following command to remove virulencefinder
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge virulencefinder
References
Summary
In this tutorial we learn how to install virulencefinder
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.