How To Install r-cran-tcr on Kali Linux
Introduction
In this tutorial we learn how to install r-cran-tcr
on Kali Linux.
What is r-cran-tcr
r-cran-tcr is:
Cells of the immune system are the grand exception to the rule that all cells of an individuum have (mostly exact) copies of the same DNA. B cells (which produce antibodies) and T cells (which communicate with cells) however have a section of their DNA with genes of the groups V, D and J that are reorganised within the genomic DNA to provide the flexibility to deal with yet unknown pathogens.
This package provides a platform for the advanced analysis of T cell receptor repertoire data and its visualisations.
Caveat: This package is soon to be replaced by http://github.com/immunomind/immunarch which is not yet available as a Debian package.
There are three methods to install r-cran-tcr
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-tcr Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-tcr
using apt-get
by running the following command:
sudo apt-get -y install r-cran-tcr
Install r-cran-tcr Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-cran-tcr
using apt
by running the following command:
sudo apt -y install r-cran-tcr
Install r-cran-tcr Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-tcr
using aptitude
by running the following command:
sudo aptitude -y install r-cran-tcr
How To Uninstall r-cran-tcr on Kali Linux
To uninstall only the r-cran-tcr
package we can use the following command:
sudo apt-get remove r-cran-tcr
Uninstall r-cran-tcr And Its Dependencies
To uninstall r-cran-tcr
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-cran-tcr
Remove r-cran-tcr Configurations and Data
To remove r-cran-tcr
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-cran-tcr
Remove r-cran-tcr configuration, data, and all of its dependencies
We can use the following command to remove r-cran-tcr
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-tcr
Dependencies
r-cran-tcr have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-ggplot2
- r-cran-dplyr
- r-cran-gridextra
- r-cran-reshape2
- r-cran-igraph
- r-cran-rcpp
- r-cran-data.table
- r-cran-gtable
- r-cran-stringdist
- r-cran-scales
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-cran-tcr
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.