How To Install r-cran-seuratobject on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-cran-seuratobject on Ubuntu 22.04.
What is r-cran-seuratobject
r-cran-seuratobject is:
Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) doi:10.1038/nbt.3192, Macosko E, Basu A, Satija R, et al (2015) doi:10.1016/j.cell.2015.05.002, and Stuart T, Butler A, et al (2019) doi:10.1016/j.cell.2019.05.031 for more details.
There are three methods to install r-cran-seuratobject on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-seuratobject Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-seuratobject using apt-get by running the following command:
sudo apt-get -y install r-cran-seuratobject
Install r-cran-seuratobject Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-seuratobject using apt by running the following command:
sudo apt -y install r-cran-seuratobject
Install r-cran-seuratobject Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-seuratobject using aptitude by running the following command:
sudo aptitude -y install r-cran-seuratobject
How To Uninstall r-cran-seuratobject on Ubuntu 22.04
To uninstall only the r-cran-seuratobject package we can use the following command:
sudo apt-get remove r-cran-seuratobject
Uninstall r-cran-seuratobject And Its Dependencies
To uninstall r-cran-seuratobject and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-cran-seuratobject
Remove r-cran-seuratobject Configurations and Data
To remove r-cran-seuratobject configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-cran-seuratobject
Remove r-cran-seuratobject configuration, data, and all of its dependencies
We can use the following command to remove r-cran-seuratobject configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-seuratobject
References
Summary
In this tutorial we learn how to install r-cran-seuratobject package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
