How To Install r-cran-gprofiler2 on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-cran-gprofiler2
on Ubuntu 22.04.
What is r-cran-gprofiler2
r-cran-gprofiler2 is:
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via ‘g:Profiler’ (https://biit.cs.ut.ee/gprofiler). The main tools are: (1) ‘g:GOSt’ - functional enrichment analysis and visualization of gene lists; (2) ‘g:Convert’ - gene/protein/transcript identifier conversion across various namespaces; (3) ‘g:Orth’ - orthology search across species; (4) ‘g:SNPense’ - mapping SNP rs identifiers to chromosome positions, genes and variant effects This package is an R interface corresponding to the 2019 update of ‘g:Profiler’ and provides access to ‘g:Profiler’ for versions ’e94_eg41_p11’ and higher. See the package ‘gProfileR’ for accessing older versions from the ‘g:Profiler’ toolset.
There are three methods to install r-cran-gprofiler2
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-cran-gprofiler2 Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-gprofiler2
using apt-get
by running the following command:
sudo apt-get -y install r-cran-gprofiler2
Install r-cran-gprofiler2 Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-cran-gprofiler2
using apt
by running the following command:
sudo apt -y install r-cran-gprofiler2
Install r-cran-gprofiler2 Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-gprofiler2
using aptitude
by running the following command:
sudo aptitude -y install r-cran-gprofiler2
How To Uninstall r-cran-gprofiler2 on Ubuntu 22.04
To uninstall only the r-cran-gprofiler2
package we can use the following command:
sudo apt-get remove r-cran-gprofiler2
Uninstall r-cran-gprofiler2 And Its Dependencies
To uninstall r-cran-gprofiler2
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-cran-gprofiler2
Remove r-cran-gprofiler2 Configurations and Data
To remove r-cran-gprofiler2
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-cran-gprofiler2
Remove r-cran-gprofiler2 configuration, data, and all of its dependencies
We can use the following command to remove r-cran-gprofiler2
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-gprofiler2
References
Summary
In this tutorial we learn how to install r-cran-gprofiler2
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.