How To Install r-cran-ddrtree on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-cran-ddrtree on Ubuntu 22.04.
What is r-cran-ddrtree
r-cran-ddrtree is:
Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.
There are three methods to install r-cran-ddrtree on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-ddrtree Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-cran-ddrtree using apt-get by running the following command:
sudo apt-get -y install r-cran-ddrtree
Install r-cran-ddrtree Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-cran-ddrtree using apt by running the following command:
sudo apt -y install r-cran-ddrtree
Install r-cran-ddrtree Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-cran-ddrtree using aptitude by running the following command:
sudo aptitude -y install r-cran-ddrtree
How To Uninstall r-cran-ddrtree on Ubuntu 22.04
To uninstall only the r-cran-ddrtree package we can use the following command:
sudo apt-get remove r-cran-ddrtree
Uninstall r-cran-ddrtree And Its Dependencies
To uninstall r-cran-ddrtree and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-cran-ddrtree
Remove r-cran-ddrtree Configurations and Data
To remove r-cran-ddrtree configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-cran-ddrtree
Remove r-cran-ddrtree configuration, data, and all of its dependencies
We can use the following command to remove r-cran-ddrtree configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-ddrtree
References
Summary
In this tutorial we learn how to install r-cran-ddrtree package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.