How To Install r-bioc-wrench on Debian 11

In this tutorial we learn how to install r-bioc-wrench on Debian 11. r-bioc-wrench is GNU R wrench normalization for sparse count data

Introduction

In this tutorial we learn how to install r-bioc-wrench on Debian 11.

What is r-bioc-wrench

r-bioc-wrench is:

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

There are three methods to install r-bioc-wrench on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-wrench Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-wrench using apt-get by running the following command:

sudo apt-get -y install r-bioc-wrench

Install r-bioc-wrench Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-wrench using apt by running the following command:

sudo apt -y install r-bioc-wrench

Install r-bioc-wrench Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-wrench using aptitude by running the following command:

sudo aptitude -y install r-bioc-wrench

How To Uninstall r-bioc-wrench on Debian 11

To uninstall only the r-bioc-wrench package we can use the following command:

sudo apt-get remove r-bioc-wrench

Uninstall r-bioc-wrench And Its Dependencies

To uninstall r-bioc-wrench and its dependencies that are no longer needed by Debian 11, we can use the command below:

sudo apt-get -y autoremove r-bioc-wrench

Remove r-bioc-wrench Configurations and Data

To remove r-bioc-wrench configuration and data from Debian 11 we can use the following command:

sudo apt-get -y purge r-bioc-wrench

Remove r-bioc-wrench configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-wrench configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-wrench

Dependencies

r-bioc-wrench have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-wrench package on Debian 11 using different package management tools: apt, apt-get and aptitude.