How To Install r-bioc-tximport on Debian 11
Introduction
In this tutorial we learn how to install r-bioc-tximport on Debian 11.
What is r-bioc-tximport
r-bioc-tximport is:
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
There are three methods to install r-bioc-tximport on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-tximport Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-tximport using apt-get by running the following command:
sudo apt-get -y install r-bioc-tximport
Install r-bioc-tximport Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-tximport using apt by running the following command:
sudo apt -y install r-bioc-tximport
Install r-bioc-tximport Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-tximport using aptitude by running the following command:
sudo aptitude -y install r-bioc-tximport
How To Uninstall r-bioc-tximport on Debian 11
To uninstall only the r-bioc-tximport package we can use the following command:
sudo apt-get remove r-bioc-tximport
Uninstall r-bioc-tximport And Its Dependencies
To uninstall r-bioc-tximport and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove r-bioc-tximport
Remove r-bioc-tximport Configurations and Data
To remove r-bioc-tximport configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge r-bioc-tximport
Remove r-bioc-tximport configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-tximport configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-tximport
Dependencies
r-bioc-tximport have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-tximport package on Debian 11 using different package management tools: apt, apt-get and aptitude.
