How To Install r-bioc-scrnaseq on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-scrnaseq on Ubuntu 22.04.
What is r-bioc-scrnaseq
r-bioc-scrnaseq is:
Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.
There are three methods to install r-bioc-scrnaseq on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-scrnaseq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-scrnaseq using apt-get by running the following command:
sudo apt-get -y install r-bioc-scrnaseq
Install r-bioc-scrnaseq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-scrnaseq using apt by running the following command:
sudo apt -y install r-bioc-scrnaseq
Install r-bioc-scrnaseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-scrnaseq using aptitude by running the following command:
sudo aptitude -y install r-bioc-scrnaseq
How To Uninstall r-bioc-scrnaseq on Ubuntu 22.04
To uninstall only the r-bioc-scrnaseq package we can use the following command:
sudo apt-get remove r-bioc-scrnaseq
Uninstall r-bioc-scrnaseq And Its Dependencies
To uninstall r-bioc-scrnaseq and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-scrnaseq
Remove r-bioc-scrnaseq Configurations and Data
To remove r-bioc-scrnaseq configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-scrnaseq
Remove r-bioc-scrnaseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-scrnaseq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-scrnaseq
References
Summary
In this tutorial we learn how to install r-bioc-scrnaseq package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
