How To Install r-bioc-rwikipathways on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-rwikipathways
on Ubuntu 22.04.
What is r-bioc-rwikipathways
r-bioc-rwikipathways is:
WikiPathways is a well-known repository for biological pathways that provides unique tools to the research community for content creation, editing and utilization.
The package rWikiPathways leverages the WikiPathways API to communicate between GNU R and WikiPathways, allowing any pathway to be queried, interrogated and downloaded in both data and image formats. Queries are typically performed based on “Xrefs”, standardized identifiers for genes, proteins and metabolites. Once you can identified a pathway, you can use the WPID (WikiPathways identifier) to make additional queries.
There are three methods to install r-bioc-rwikipathways
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-rwikipathways Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-rwikipathways
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-rwikipathways
Install r-bioc-rwikipathways Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-rwikipathways
using apt
by running the following command:
sudo apt -y install r-bioc-rwikipathways
Install r-bioc-rwikipathways Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-rwikipathways
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-rwikipathways
How To Uninstall r-bioc-rwikipathways on Ubuntu 22.04
To uninstall only the r-bioc-rwikipathways
package we can use the following command:
sudo apt-get remove r-bioc-rwikipathways
Uninstall r-bioc-rwikipathways And Its Dependencies
To uninstall r-bioc-rwikipathways
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-rwikipathways
Remove r-bioc-rwikipathways Configurations and Data
To remove r-bioc-rwikipathways
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-rwikipathways
Remove r-bioc-rwikipathways configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-rwikipathways
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-rwikipathways
References
Summary
In this tutorial we learn how to install r-bioc-rwikipathways
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.