How To Install r-bioc-rhdf5filters on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-rhdf5filters
on Ubuntu 22.04.
What is r-bioc-rhdf5filters
r-bioc-rhdf5filters is:
This Bioconductor package provides a collection of compression filters for use with HDF5 datasets.
One of the advantages of using HDF5 is that data stored on disk can be compressed, reducing both the space required to store them and the time needed to read those data. This data compression is applied as part of the HDF5 “filter pipeline” that modifies data during I/O operations. HDF5 includes several filter algorithms as standard, and the version of the HDF5 library found in Rhdf5lib is additionally compiled with support for the deflate and szip compression filters which rely on third-party compression libraries. Collectively HDF5 refer to these as the “internal” filters. It is possible to use any combination of these (including none) when writing data using rhdf5.
There are three methods to install r-bioc-rhdf5filters
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-rhdf5filters Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-rhdf5filters
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-rhdf5filters
Install r-bioc-rhdf5filters Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-rhdf5filters
using apt
by running the following command:
sudo apt -y install r-bioc-rhdf5filters
Install r-bioc-rhdf5filters Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-rhdf5filters
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-rhdf5filters
How To Uninstall r-bioc-rhdf5filters on Ubuntu 22.04
To uninstall only the r-bioc-rhdf5filters
package we can use the following command:
sudo apt-get remove r-bioc-rhdf5filters
Uninstall r-bioc-rhdf5filters And Its Dependencies
To uninstall r-bioc-rhdf5filters
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-rhdf5filters
Remove r-bioc-rhdf5filters Configurations and Data
To remove r-bioc-rhdf5filters
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-rhdf5filters
Remove r-bioc-rhdf5filters configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-rhdf5filters
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-rhdf5filters
References
Summary
In this tutorial we learn how to install r-bioc-rhdf5filters
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.