How To Install r-bioc-monocle on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-monocle on Ubuntu 22.04.
What is r-bioc-monocle
r-bioc-monocle is:
Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.
There are three methods to install r-bioc-monocle on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-monocle Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-monocle using apt-get by running the following command:
sudo apt-get -y install r-bioc-monocle
Install r-bioc-monocle Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-monocle using apt by running the following command:
sudo apt -y install r-bioc-monocle
Install r-bioc-monocle Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-monocle using aptitude by running the following command:
sudo aptitude -y install r-bioc-monocle
How To Uninstall r-bioc-monocle on Ubuntu 22.04
To uninstall only the r-bioc-monocle package we can use the following command:
sudo apt-get remove r-bioc-monocle
Uninstall r-bioc-monocle And Its Dependencies
To uninstall r-bioc-monocle and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-monocle
Remove r-bioc-monocle Configurations and Data
To remove r-bioc-monocle configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-monocle
Remove r-bioc-monocle configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-monocle configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-monocle
References
Summary
In this tutorial we learn how to install r-bioc-monocle package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.