How To Install r-bioc-gseabase on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-gseabase on Debian 12.
What is r-bioc-gseabase
r-bioc-gseabase is:
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
There are three methods to install r-bioc-gseabase on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-gseabase Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-gseabase using apt-get by running the following command:
sudo apt-get -y install r-bioc-gseabase
Install r-bioc-gseabase Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-gseabase using apt by running the following command:
sudo apt -y install r-bioc-gseabase
Install r-bioc-gseabase Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-gseabase using aptitude by running the following command:
sudo aptitude -y install r-bioc-gseabase
How To Uninstall r-bioc-gseabase on Debian 12
To uninstall only the r-bioc-gseabase package we can use the following command:
sudo apt-get remove r-bioc-gseabase
Uninstall r-bioc-gseabase And Its Dependencies
To uninstall r-bioc-gseabase and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-gseabase
Remove r-bioc-gseabase Configurations and Data
To remove r-bioc-gseabase configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-gseabase
Remove r-bioc-gseabase configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-gseabase configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-gseabase
Dependencies
r-bioc-gseabase have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-bioc-biobase
- r-bioc-annotate
- r-bioc-graph
- r-bioc-annotationdbi
- r-cran-xml
References
Summary
In this tutorial we learn how to install r-bioc-gseabase package on Debian 12 using different package management tools: apt, apt-get and aptitude.
