How To Install r-bioc-annotate on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-annotate on Debian 12.
What is r-bioc-annotate
r-bioc-annotate is:
This BioConductor module provides methods for annotation for microarrays.
In its current state the basic purpose of annotate is to supply interface routines that support user actions that rely on the different meta-data packages provided through the Bioconductor Project.
There are three methods to install r-bioc-annotate on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-annotate Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-annotate using apt-get by running the following command:
sudo apt-get -y install r-bioc-annotate
Install r-bioc-annotate Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-annotate using apt by running the following command:
sudo apt -y install r-bioc-annotate
Install r-bioc-annotate Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-annotate using aptitude by running the following command:
sudo aptitude -y install r-bioc-annotate
How To Uninstall r-bioc-annotate on Debian 12
To uninstall only the r-bioc-annotate package we can use the following command:
sudo apt-get remove r-bioc-annotate
Uninstall r-bioc-annotate And Its Dependencies
To uninstall r-bioc-annotate and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-annotate
Remove r-bioc-annotate Configurations and Data
To remove r-bioc-annotate configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-annotate
Remove r-bioc-annotate configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-annotate configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-annotate
Dependencies
r-bioc-annotate have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-annotationdbi
- r-cran-xml
- r-bioc-biobase
- r-cran-dbi
- r-cran-xtable
- r-bioc-biocgenerics
- r-cran-httr
References
Summary
In this tutorial we learn how to install r-bioc-annotate package on Debian 12 using different package management tools: apt, apt-get and aptitude.
