How To Install python3-bioframe on Debian 12
Introduction
In this tutorial we learn how to install python3-bioframe on Debian 12.
What is python3-bioframe
python3-bioframe is:
Building bioframe directly on top of pandas enables immediate access to a rich set of dataframe operations. Working in Python enables rapid visualization (e.g. matplotlib, seaborn) and iteration of genomic analyses.
Bioframe implements a variety of genomic interval operations directly on dataframes. Bioframe also includes functions for loading diverse genomic data formats, and performing operations on special classes of genomic intervals, including chromosome arms and fixed size bins.
There are three methods to install python3-bioframe on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-bioframe Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-bioframe using apt-get by running the following command:
sudo apt-get -y install python3-bioframe
Install python3-bioframe Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-bioframe using apt by running the following command:
sudo apt -y install python3-bioframe
Install python3-bioframe Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-bioframe using aptitude by running the following command:
sudo aptitude -y install python3-bioframe
How To Uninstall python3-bioframe on Debian 12
To uninstall only the python3-bioframe package we can use the following command:
sudo apt-get remove python3-bioframe
Uninstall python3-bioframe And Its Dependencies
To uninstall python3-bioframe and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove python3-bioframe
Remove python3-bioframe Configurations and Data
To remove python3-bioframe configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge python3-bioframe
Remove python3-bioframe configuration, data, and all of its dependencies
We can use the following command to remove python3-bioframe configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-bioframe
Dependencies
python3-bioframe have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-bioframe package on Debian 12 using different package management tools: apt, apt-get and aptitude.
