How To Install pybedtools-bin on Ubuntu 22.04
Introduction
In this tutorial we learn how to install pybedtools-bin on Ubuntu 22.04.
What is pybedtools-bin
pybedtools-bin is:
The BEDTools suite of programs is widely used for genomic interval manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.
This package provides scripts that are executable with the Python 3 version of this package.
There are three methods to install pybedtools-bin on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install pybedtools-bin Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install pybedtools-bin using apt-get by running the following command:
sudo apt-get -y install pybedtools-bin
Install pybedtools-bin Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install pybedtools-bin using apt by running the following command:
sudo apt -y install pybedtools-bin
Install pybedtools-bin Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install pybedtools-bin using aptitude by running the following command:
sudo aptitude -y install pybedtools-bin
How To Uninstall pybedtools-bin on Ubuntu 22.04
To uninstall only the pybedtools-bin package we can use the following command:
sudo apt-get remove pybedtools-bin
Uninstall pybedtools-bin And Its Dependencies
To uninstall pybedtools-bin and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove pybedtools-bin
Remove pybedtools-bin Configurations and Data
To remove pybedtools-bin configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge pybedtools-bin
Remove pybedtools-bin configuration, data, and all of its dependencies
We can use the following command to remove pybedtools-bin configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge pybedtools-bin
References
Summary
In this tutorial we learn how to install pybedtools-bin package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.