How To Install pigx-rnaseq on Ubuntu 22.04
Introduction
In this tutorial we learn how to install pigx-rnaseq
on Ubuntu 22.04.
What is pigx-rnaseq
pigx-rnaseq is:
This package provides a automated workflow for the automated analysis of RNA-seq experiments. A series of well-accecpted tools are connected in Python scripts and controlled via snakemake. This supports the parallel execution of these workflows and provides checkpointing, such that interrupted workflows can take up their work again.
There are three methods to install pigx-rnaseq
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install pigx-rnaseq Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install pigx-rnaseq
using apt-get
by running the following command:
sudo apt-get -y install pigx-rnaseq
Install pigx-rnaseq Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install pigx-rnaseq
using apt
by running the following command:
sudo apt -y install pigx-rnaseq
Install pigx-rnaseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install pigx-rnaseq
using aptitude
by running the following command:
sudo aptitude -y install pigx-rnaseq
How To Uninstall pigx-rnaseq on Ubuntu 22.04
To uninstall only the pigx-rnaseq
package we can use the following command:
sudo apt-get remove pigx-rnaseq
Uninstall pigx-rnaseq And Its Dependencies
To uninstall pigx-rnaseq
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove pigx-rnaseq
Remove pigx-rnaseq Configurations and Data
To remove pigx-rnaseq
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge pigx-rnaseq
Remove pigx-rnaseq configuration, data, and all of its dependencies
We can use the following command to remove pigx-rnaseq
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge pigx-rnaseq
References
Summary
In this tutorial we learn how to install pigx-rnaseq
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.