How To Install paml-doc on Debian 11

In this tutorial we learn how to install paml-doc on Debian 11. paml-doc is Documentation for PAML

Introduction

In this tutorial we learn how to install paml-doc on Debian 11.

What is paml-doc

paml-doc is:

PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.

The source code comes with a series of PDF files to help with further insights for the working of, and with, PAML.

There are three methods to install paml-doc on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install paml-doc Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install paml-doc using apt-get by running the following command:

sudo apt-get -y install paml-doc

Install paml-doc Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install paml-doc using apt by running the following command:

sudo apt -y install paml-doc

Install paml-doc Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install paml-doc using aptitude by running the following command:

sudo aptitude -y install paml-doc

How To Uninstall paml-doc on Debian 11

To uninstall only the paml-doc package we can use the following command:

sudo apt-get remove paml-doc

Uninstall paml-doc And Its Dependencies

To uninstall paml-doc and its dependencies that are no longer needed by Debian 11, we can use the command below:

sudo apt-get -y autoremove paml-doc

Remove paml-doc Configurations and Data

To remove paml-doc configuration and data from Debian 11 we can use the following command:

sudo apt-get -y purge paml-doc

Remove paml-doc configuration, data, and all of its dependencies

We can use the following command to remove paml-doc configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge paml-doc

Dependencies

paml-doc have the following dependencies:

References

Summary

In this tutorial we learn how to install paml-doc package on Debian 11 using different package management tools: apt, apt-get and aptitude.