How To Install nanofilt on Ubuntu 22.04
Introduction
In this tutorial we learn how to install nanofilt
on Ubuntu 22.04.
What is nanofilt
nanofilt is:
Filtering and trimming of long read sequencing data. Filtering on quality and/or read length, and optional trimming after passing filters. Reads from stdin, writes to stdout. Optionally reads directly from an uncompressed file specified on the command line.
Intended to be used:
- directly after fastq extraction.
- prior to mapping.
- in a stream between extraction and mapping.
There are three methods to install nanofilt
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install nanofilt Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install nanofilt
using apt-get
by running the following command:
sudo apt-get -y install nanofilt
Install nanofilt Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install nanofilt
using apt
by running the following command:
sudo apt -y install nanofilt
Install nanofilt Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install nanofilt
using aptitude
by running the following command:
sudo aptitude -y install nanofilt
How To Uninstall nanofilt on Ubuntu 22.04
To uninstall only the nanofilt
package we can use the following command:
sudo apt-get remove nanofilt
Uninstall nanofilt And Its Dependencies
To uninstall nanofilt
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove nanofilt
Remove nanofilt Configurations and Data
To remove nanofilt
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge nanofilt
Remove nanofilt configuration, data, and all of its dependencies
We can use the following command to remove nanofilt
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge nanofilt
References
Summary
In this tutorial we learn how to install nanofilt
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.