How To Install mlv-smile on Debian 9

In this tutorial we learn how to install mlv-smile on Debian 9. mlv-smile is Find statistically significant patterns in sequences

Introduction

In this tutorial we learn how to install mlv-smile on Debian 9.

What is mlv-smile

mlv-smile is:

Smile determines sequence motifs on the basis of a set of DNA, RNA or protein sequences.

  • No hard limit on the number of combinations of motifs to describe subsets of sequences.
  • The sequence alphabet may be specified.
  • The use of wildcards is supported.
  • Better determination of significance of motifs by simulation.
  • Introduction of a set of sequences with negative controls that should not match automatically determined motifs.

There are three methods to install mlv-smile on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install mlv-smile Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install mlv-smile using apt-get by running the following command:

sudo apt-get -y install mlv-smile

Install mlv-smile Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install mlv-smile using apt by running the following command:

sudo apt -y install mlv-smile

Install mlv-smile Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install mlv-smile using aptitude by running the following command:

sudo aptitude -y install mlv-smile

How To Uninstall mlv-smile on Debian 9

To uninstall only the mlv-smile package we can use the following command:

sudo apt-get remove mlv-smile

Uninstall mlv-smile And Its Dependencies

To uninstall mlv-smile and its dependencies that are no longer needed by Debian 9, we can use the command below:

sudo apt-get -y autoremove mlv-smile

Remove mlv-smile Configurations and Data

To remove mlv-smile configuration and data from Debian 9 we can use the following command:

sudo apt-get -y purge mlv-smile

Remove mlv-smile configuration, data, and all of its dependencies

We can use the following command to remove mlv-smile configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge mlv-smile

Dependencies

mlv-smile have the following dependencies:

References

Summary

In this tutorial we learn how to install mlv-smile package on Debian 9 using different package management tools: apt, apt-get and aptitude.